Cluster: HRGMv2_0994_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0994_22 | HRGMv2_0994_22_11 | 7153 | 7902 | - | 3.A.1.3.20 |
| TC | HRGMv2_0994_22 | HRGMv2_0994_22_12 | 7915 | 9276 | - | 3.A.1.3.16 |
| TC | HRGMv2_0994_22 | HRGMv2_0994_22_13 | 9395 | 10255 | - | 3.A.1.3.15 |
| pfam | HRGMv2_0994_22 | HRGMv2_0994_22_14 | 10403 | 11269 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_0994_22 | HRGMv2_0994_22_15 | 11423 | 12442 | - | GH109 |
Gene ID: HRGMv2_0994_22_11
Type: TC
Location: 7153 - 7902 (-)
Type: TC
Location: 7153 - 7902 (-)
Gene ID: HRGMv2_0994_22_12
Type: TC
Location: 7915 - 9276 (-)
Type: TC
Location: 7915 - 9276 (-)
Gene ID: HRGMv2_0994_22_13
Type: TC
Location: 9395 - 10255 (-)
Type: TC
Location: 9395 - 10255 (-)
Gene ID: HRGMv2_0994_22_14
Type: pfam
Location: 10403 - 11269 (-)
Type: pfam
Location: 10403 - 11269 (-)
Gene ID: HRGMv2_0994_22_15
Type: CAZyme
Location: 11423 - 12442 (-)
Type: CAZyme
Location: 11423 - 12442 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.