Cluster: HRGMv2_0994_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0994_10 | HRGMv2_0994_10_43 | 40420 | 41778 | - | 2.A.33.1.1 |
| pfam | HRGMv2_0994_10 | HRGMv2_0994_10_44 | 42046 | 42969 | - | DHH | DHHA2 |
| STP | HRGMv2_0994_10 | HRGMv2_0994_10_45 | 43119 | 44072 | - | Glucokinase |
| TC | HRGMv2_0994_10 | HRGMv2_0994_10_46 | 44314 | 44646 | - | 4.A.3.2.3 |
| TC | HRGMv2_0994_10 | HRGMv2_0994_10_47 | 44656 | 44958 | - | 4.A.3.2.9 |
| TC | HRGMv2_0994_10 | HRGMv2_0994_10_48 | 45116 | 46459 | - | 4.A.3.2.9 |
| CAZyme | HRGMv2_0994_10 | HRGMv2_0994_10_49 | 46580 | 47980 | - | GH1 |
Gene ID: HRGMv2_0994_10_43
Type: TC
Location: 40420 - 41778 (-)
Type: TC
Location: 40420 - 41778 (-)
Gene ID: HRGMv2_0994_10_44
Type: pfam
Location: 42046 - 42969 (-)
Type: pfam
Location: 42046 - 42969 (-)
Gene ID: HRGMv2_0994_10_45
Type: STP
Location: 43119 - 44072 (-)
Type: STP
Location: 43119 - 44072 (-)
Gene ID: HRGMv2_0994_10_46
Type: TC
Location: 44314 - 44646 (-)
Type: TC
Location: 44314 - 44646 (-)
Gene ID: HRGMv2_0994_10_47
Type: TC
Location: 44656 - 44958 (-)
Type: TC
Location: 44656 - 44958 (-)
Gene ID: HRGMv2_0994_10_48
Type: TC
Location: 45116 - 46459 (-)
Type: TC
Location: 45116 - 46459 (-)
Gene ID: HRGMv2_0994_10_49
Type: CAZyme
Location: 46580 - 47980 (-)
Type: CAZyme
Location: 46580 - 47980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0994_10_47 | vegan > omnivore | 1.05213 | 0.00455 |