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Cluster: HRGMv2_0994_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0994_10 HRGMv2_0994_10_11 9130 10299 - CE9
STP HRGMv2_0994_10 HRGMv2_0994_10_12 10417 11583 - SIS | SIS
TF HRGMv2_0994_10 HRGMv2_0994_10_13 11698 12429 - GntR
TC HRGMv2_0994_10 HRGMv2_0994_10_14 12615 13697 - 4.A.6.1.4
TC HRGMv2_0994_10 HRGMv2_0994_10_15 13687 14487 - 4.A.6.1.4
TC HRGMv2_0994_10 HRGMv2_0994_10_16 14578 15060 - 4.A.6.1.4
pfam HRGMv2_0994_10 HRGMv2_0994_10_17 15097 15378 - YajC
TC HRGMv2_0994_10 HRGMv2_0994_10_18 15378 15821 - 4.A.6.1.16
Gene ID: HRGMv2_0994_10_11
Type: CAZyme
Location: 9130 - 10299 (-)
Gene ID: HRGMv2_0994_10_12
Type: STP
Location: 10417 - 11583 (-)
Gene ID: HRGMv2_0994_10_13
Type: TF
Location: 11698 - 12429 (-)
Gene ID: HRGMv2_0994_10_14
Type: TC
Location: 12615 - 13697 (-)
Gene ID: HRGMv2_0994_10_15
Type: TC
Location: 13687 - 14487 (-)
Gene ID: HRGMv2_0994_10_16
Type: TC
Location: 14578 - 15060 (-)
Gene ID: HRGMv2_0994_10_17
Type: pfam
Location: 15097 - 15378 (-)
Gene ID: HRGMv2_0994_10_18
Type: TC
Location: 15378 - 15821 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0994_10_17 vegan > omnivore 1.02298 0.00455

🧭 Explore Read Mapping of CGC

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