Cluster: HRGMv2_0994_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0994_9 | HRGMv2_0994_9_43 | 45482 | 46924 | - | GH32 |
| TC | HRGMv2_0994_9 | HRGMv2_0994_9_44 | 47025 | 48476 | - | 4.A.1.2.8 |
| CAZyme | HRGMv2_0994_9 | HRGMv2_0994_9_45 | 48522 | 49904 | - | GH32 |
Gene ID: HRGMv2_0994_9_43
Type: CAZyme
Location: 45482 - 46924 (-)
Type: CAZyme
Location: 45482 - 46924 (-)
Gene ID: HRGMv2_0994_9_44
Type: TC
Location: 47025 - 48476 (-)
Type: TC
Location: 47025 - 48476 (-)
Gene ID: HRGMv2_0994_9_45
Type: CAZyme
Location: 48522 - 49904 (-)
Type: CAZyme
Location: 48522 - 49904 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0994_9_45 | vegan > omnivore | 1.15577 | 0.00455 |