Cluster: HRGMv2_0994_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0994_2 | HRGMv2_0994_2_37 | 37742 | 38857 | - | GT28 |
| TC | HRGMv2_0994_2 | HRGMv2_0994_2_38 | 38847 | 40340 | - | 2.A.103.1.1 |
| pfam | HRGMv2_0994_2 | HRGMv2_0994_2_39 | 40377 | 41783 | - | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0994_2 | HRGMv2_0994_2_40 | 41793 | 42812 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_0994_2_37
Type: CAZyme
Location: 37742 - 38857 (-)
Type: CAZyme
Location: 37742 - 38857 (-)
Gene ID: HRGMv2_0994_2_38
Type: TC
Location: 38847 - 40340 (-)
Type: TC
Location: 38847 - 40340 (-)
Gene ID: HRGMv2_0994_2_39
Type: pfam
Location: 40377 - 41783 (-)
Type: pfam
Location: 40377 - 41783 (-)
Gene ID: HRGMv2_0994_2_40
Type: TC
Location: 41793 - 42812 (-)
Type: TC
Location: 41793 - 42812 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.