Cluster: HRGMv2_0994_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0994_42 | HRGMv2_0994_42_5 | 3713 | 4657 | - | GT2 |
| CAZyme | HRGMv2_0994_42 | HRGMv2_0994_42_6 | 4675 | 5892 | - | GT4 |
| STP | HRGMv2_0994_42 | HRGMv2_0994_42_7 | 5885 | 7090 | - | Fer4 | Fer4 |
| pfam | HRGMv2_0994_42 | HRGMv2_0994_42_8 | 7104 | 8222 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_0994_42 | HRGMv2_0994_42_9 | 8222 | 9331 | - | GT4 |
| TC | HRGMv2_0994_42 | HRGMv2_0994_42_10 | 9332 | 10093 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_0994_42_5
Type: CAZyme
Location: 3713 - 4657 (-)
Type: CAZyme
Location: 3713 - 4657 (-)
Gene ID: HRGMv2_0994_42_6
Type: CAZyme
Location: 4675 - 5892 (-)
Type: CAZyme
Location: 4675 - 5892 (-)
Gene ID: HRGMv2_0994_42_7
Type: STP
Location: 5885 - 7090 (-)
Type: STP
Location: 5885 - 7090 (-)
Gene ID: HRGMv2_0994_42_8
Type: pfam
Location: 7104 - 8222 (-)
Type: pfam
Location: 7104 - 8222 (-)
Gene ID: HRGMv2_0994_42_9
Type: CAZyme
Location: 8222 - 9331 (-)
Type: CAZyme
Location: 8222 - 9331 (-)
Gene ID: HRGMv2_0994_42_10
Type: TC
Location: 9332 - 10093 (-)
Type: TC
Location: 9332 - 10093 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.