Cluster: HRGMv2_0994_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0994
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0994_38 | HRGMv2_0994_38_16 | 17401 | 18807 | + | CE4 |
| STP | HRGMv2_0994_38 | HRGMv2_0994_38_17 | 19141 | 20985 | + | CBS | CBS |
| TC | HRGMv2_0994_38 | HRGMv2_0994_38_18 | 20994 | 22256 | + | 2.A.55.3.6 |
Gene ID: HRGMv2_0994_38_16
Type: CAZyme
Location: 17401 - 18807 (+)
Type: CAZyme
Location: 17401 - 18807 (+)
Gene ID: HRGMv2_0994_38_17
Type: STP
Location: 19141 - 20985 (+)
Type: STP
Location: 19141 - 20985 (+)
Gene ID: HRGMv2_0994_38_18
Type: TC
Location: 20994 - 22256 (+)
Type: TC
Location: 20994 - 22256 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.