Cluster: HRGMv2_0993_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0993
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0993_15 | HRGMv2_0993_15_5 | 4812 | 7028 | + | 9.B.97.5.1 |
| TC | HRGMv2_0993_15 | HRGMv2_0993_15_6 | 7322 | 8584 | - | 2.A.55.3.6 |
| STP | HRGMv2_0993_15 | HRGMv2_0993_15_7 | 8593 | 10437 | - | CBS | CBS |
| CAZyme | HRGMv2_0993_15 | HRGMv2_0993_15_8 | 10758 | 12164 | - | CE4 |
Gene ID: HRGMv2_0993_15_5
Type: TC
Location: 4812 - 7028 (+)
Type: TC
Location: 4812 - 7028 (+)
Gene ID: HRGMv2_0993_15_6
Type: TC
Location: 7322 - 8584 (-)
Type: TC
Location: 7322 - 8584 (-)
Gene ID: HRGMv2_0993_15_7
Type: STP
Location: 8593 - 10437 (-)
Type: STP
Location: 8593 - 10437 (-)
Gene ID: HRGMv2_0993_15_8
Type: CAZyme
Location: 10758 - 12164 (-)
Type: CAZyme
Location: 10758 - 12164 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.