Cluster: HRGMv2_0993_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0993
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0993_11 | HRGMv2_0993_11_2 | 722 | 3292 | - | GH106 |
| TF | HRGMv2_0993_11 | HRGMv2_0993_11_3 | 3511 | 4518 | + | HTH_AraC |
| CAZyme | HRGMv2_0993_11 | HRGMv2_0993_11_4 | 4691 | 6139 | + | GH1 |
| TC | HRGMv2_0993_11 | HRGMv2_0993_11_5 | 6291 | 6827 | + | 4.A.1.2.6 |
Gene ID: HRGMv2_0993_11_2
Type: CAZyme
Location: 722 - 3292 (-)
Type: CAZyme
Location: 722 - 3292 (-)
Gene ID: HRGMv2_0993_11_3
Type: TF
Location: 3511 - 4518 (+)
Type: TF
Location: 3511 - 4518 (+)
Gene ID: HRGMv2_0993_11_4
Type: CAZyme
Location: 4691 - 6139 (+)
Type: CAZyme
Location: 4691 - 6139 (+)
Gene ID: HRGMv2_0993_11_5
Type: TC
Location: 6291 - 6827 (+)
Type: TC
Location: 6291 - 6827 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.