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Cluster: HRGMv2_0993_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0993_7 HRGMv2_0993_7_11 9560 10042 + 4.A.6.1.5
sulfatase HRGMv2_0993_7 HRGMv2_0993_7_12 10368 11420 - S1_4
TF HRGMv2_0993_7 HRGMv2_0993_7_13 11627 12391 + HTH_DeoR
CAZyme HRGMv2_0993_7 HRGMv2_0993_7_14 12898 14319 - GH1
TC HRGMv2_0993_7 HRGMv2_0993_7_15 14395 16173 - 4.A.3.1.1
TF HRGMv2_0993_7 HRGMv2_0993_7_16 16449 17459 + LacI
TC HRGMv2_0993_7 HRGMv2_0993_7_17 17793 19553 - 4.A.3.1.1
CAZyme HRGMv2_0993_7 HRGMv2_0993_7_18 19730 21172 - GH1
TF HRGMv2_0993_7 HRGMv2_0993_7_19 21514 22551 + LacI
CAZyme HRGMv2_0993_7 HRGMv2_0993_7_20 22822 24261 - GH1
TC HRGMv2_0993_7 HRGMv2_0993_7_21 24328 26103 - 4.A.3.1.1
TF HRGMv2_0993_7 HRGMv2_0993_7_22 26461 27465 + LacI
TC HRGMv2_0993_7 HRGMv2_0993_7_23 27679 28017 + 4.A.3.1.2
Gene ID: HRGMv2_0993_7_11
Type: TC
Location: 9560 - 10042 (+)
Gene ID: HRGMv2_0993_7_12
Type: sulfatase
Location: 10368 - 11420 (-)
Gene ID: HRGMv2_0993_7_13
Type: TF
Location: 11627 - 12391 (+)
Gene ID: HRGMv2_0993_7_14
Type: CAZyme
Location: 12898 - 14319 (-)
Gene ID: HRGMv2_0993_7_15
Type: TC
Location: 14395 - 16173 (-)
Gene ID: HRGMv2_0993_7_16
Type: TF
Location: 16449 - 17459 (+)
Gene ID: HRGMv2_0993_7_17
Type: TC
Location: 17793 - 19553 (-)
Gene ID: HRGMv2_0993_7_18
Type: CAZyme
Location: 19730 - 21172 (-)
Gene ID: HRGMv2_0993_7_19
Type: TF
Location: 21514 - 22551 (+)
Gene ID: HRGMv2_0993_7_20
Type: CAZyme
Location: 22822 - 24261 (-)
Gene ID: HRGMv2_0993_7_21
Type: TC
Location: 24328 - 26103 (-)
Gene ID: HRGMv2_0993_7_22
Type: TF
Location: 26461 - 27465 (+)
Gene ID: HRGMv2_0993_7_23
Type: TC
Location: 27679 - 28017 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0993_7_19 vegetarian > omnivore 1.06821 0.02242

🧭 Explore Read Mapping of CGC

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