Cluster: HRGMv2_0993_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0993
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0993_7 | HRGMv2_0993_7_1 | 3 | 308 | + | 4.A.6.1.4 |
| TC | HRGMv2_0993_7 | HRGMv2_0993_7_2 | 399 | 1199 | + | 4.A.6.1.4 |
| TC | HRGMv2_0993_7 | HRGMv2_0993_7_3 | 1189 | 2271 | + | 4.A.6.1.4 |
| TF | HRGMv2_0993_7 | HRGMv2_0993_7_4 | 2457 | 3188 | + | GntR |
| STP | HRGMv2_0993_7 | HRGMv2_0993_7_5 | 3303 | 4469 | + | SIS | SIS |
| CAZyme | HRGMv2_0993_7 | HRGMv2_0993_7_6 | 4587 | 5756 | + | CE9 |
Gene ID: HRGMv2_0993_7_1
Type: TC
Location: 3 - 308 (+)
Type: TC
Location: 3 - 308 (+)
Gene ID: HRGMv2_0993_7_2
Type: TC
Location: 399 - 1199 (+)
Type: TC
Location: 399 - 1199 (+)
Gene ID: HRGMv2_0993_7_3
Type: TC
Location: 1189 - 2271 (+)
Type: TC
Location: 1189 - 2271 (+)
Gene ID: HRGMv2_0993_7_4
Type: TF
Location: 2457 - 3188 (+)
Type: TF
Location: 2457 - 3188 (+)
Gene ID: HRGMv2_0993_7_5
Type: STP
Location: 3303 - 4469 (+)
Type: STP
Location: 3303 - 4469 (+)
Gene ID: HRGMv2_0993_7_6
Type: CAZyme
Location: 4587 - 5756 (+)
Type: CAZyme
Location: 4587 - 5756 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.