Cluster: HRGMv2_0993_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0993
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0993_170 | HRGMv2_0993_170_2 | 624 | 1595 | - | GT81 |
| TC | HRGMv2_0993_170 | HRGMv2_0993_170_3 | 1756 | 2601 | + | 3.A.1.103.6 |
| TC | HRGMv2_0993_170 | HRGMv2_0993_170_4 | 2613 | 3266 | + | 3.A.1.103.5 |
Gene ID: HRGMv2_0993_170_2
Type: CAZyme
Location: 624 - 1595 (-)
Type: CAZyme
Location: 624 - 1595 (-)
Gene ID: HRGMv2_0993_170_3
Type: TC
Location: 1756 - 2601 (+)
Type: TC
Location: 1756 - 2601 (+)
Gene ID: HRGMv2_0993_170_4
Type: TC
Location: 2613 - 3266 (+)
Type: TC
Location: 2613 - 3266 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AD
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.