dbCAN Logo

Cluster: HRGMv2_0992_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0992_11 HRGMv2_0992_11_19 15911 17332 - GH1
TC HRGMv2_0992_11 HRGMv2_0992_11_20 17409 19172 - 4.A.3.1.1
TF HRGMv2_0992_11 HRGMv2_0992_11_21 19448 20458 + LacI
TC HRGMv2_0992_11 HRGMv2_0992_11_22 20631 22391 - 4.A.3.1.1
CAZyme HRGMv2_0992_11 HRGMv2_0992_11_23 22568 24010 - GH1
TF HRGMv2_0992_11 HRGMv2_0992_11_24 24352 25389 + LacI
CAZyme HRGMv2_0992_11 HRGMv2_0992_11_25 25659 27098 - GH1
TC HRGMv2_0992_11 HRGMv2_0992_11_26 27164 28939 - 4.A.3.1.1
TF HRGMv2_0992_11 HRGMv2_0992_11_27 29298 30302 + LacI
TC HRGMv2_0992_11 HRGMv2_0992_11_28 30517 30855 + 4.A.3.1.2
Gene ID: HRGMv2_0992_11_19
Type: CAZyme
Location: 15911 - 17332 (-)
Gene ID: HRGMv2_0992_11_20
Type: TC
Location: 17409 - 19172 (-)
Gene ID: HRGMv2_0992_11_21
Type: TF
Location: 19448 - 20458 (+)
Gene ID: HRGMv2_0992_11_22
Type: TC
Location: 20631 - 22391 (-)
Gene ID: HRGMv2_0992_11_23
Type: CAZyme
Location: 22568 - 24010 (-)
Gene ID: HRGMv2_0992_11_24
Type: TF
Location: 24352 - 25389 (+)
Gene ID: HRGMv2_0992_11_25
Type: CAZyme
Location: 25659 - 27098 (-)
Gene ID: HRGMv2_0992_11_26
Type: TC
Location: 27164 - 28939 (-)
Gene ID: HRGMv2_0992_11_27
Type: TF
Location: 29298 - 30302 (+)
Gene ID: HRGMv2_0992_11_28
Type: TC
Location: 30517 - 30855 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List