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Cluster: HRGMv2_0992_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0992_11 HRGMv2_0992_11_1 602 1045 + 4.A.6.1.16
pfam HRGMv2_0992_11 HRGMv2_0992_11_2 1045 1326 + YajC
TC HRGMv2_0992_11 HRGMv2_0992_11_3 1363 1845 + 4.A.6.1.4
TC HRGMv2_0992_11 HRGMv2_0992_11_4 1936 2736 + 4.A.6.1.4
TC HRGMv2_0992_11 HRGMv2_0992_11_5 2726 3808 + 4.A.6.1.4
TF HRGMv2_0992_11 HRGMv2_0992_11_6 3994 4725 + GntR
STP HRGMv2_0992_11 HRGMv2_0992_11_7 4840 6006 + SIS | SIS
CAZyme HRGMv2_0992_11 HRGMv2_0992_11_8 6125 7294 + CE9
Gene ID: HRGMv2_0992_11_1
Type: TC
Location: 602 - 1045 (+)
Gene ID: HRGMv2_0992_11_2
Type: pfam
Location: 1045 - 1326 (+)
Gene ID: HRGMv2_0992_11_3
Type: TC
Location: 1363 - 1845 (+)
Gene ID: HRGMv2_0992_11_4
Type: TC
Location: 1936 - 2736 (+)
Gene ID: HRGMv2_0992_11_5
Type: TC
Location: 2726 - 3808 (+)
Gene ID: HRGMv2_0992_11_6
Type: TF
Location: 3994 - 4725 (+)
Gene ID: HRGMv2_0992_11_7
Type: STP
Location: 4840 - 6006 (+)
Gene ID: HRGMv2_0992_11_8
Type: CAZyme
Location: 6125 - 7294 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0992_11_2 vegan > omnivore 1.03373 0.00701

🧭 Explore Read Mapping of CGC

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