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Cluster: HRGMv2_0991_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0991_15 HRGMv2_0991_15_25 28579 29748 - CE9
STP HRGMv2_0991_15 HRGMv2_0991_15_26 29868 31034 - SIS | SIS
TF HRGMv2_0991_15 HRGMv2_0991_15_27 31149 31880 - GntR
TC HRGMv2_0991_15 HRGMv2_0991_15_28 32067 33149 - 4.A.6.1.4
TC HRGMv2_0991_15 HRGMv2_0991_15_29 33139 33939 - 4.A.6.1.4
TC HRGMv2_0991_15 HRGMv2_0991_15_30 34030 34512 - 4.A.6.1.4
pfam HRGMv2_0991_15 HRGMv2_0991_15_31 34549 34830 - YajC
TC HRGMv2_0991_15 HRGMv2_0991_15_32 34830 35273 - 4.A.6.1.16
Gene ID: HRGMv2_0991_15_25
Type: CAZyme
Location: 28579 - 29748 (-)
Gene ID: HRGMv2_0991_15_26
Type: STP
Location: 29868 - 31034 (-)
Gene ID: HRGMv2_0991_15_27
Type: TF
Location: 31149 - 31880 (-)
Gene ID: HRGMv2_0991_15_28
Type: TC
Location: 32067 - 33149 (-)
Gene ID: HRGMv2_0991_15_29
Type: TC
Location: 33139 - 33939 (-)
Gene ID: HRGMv2_0991_15_30
Type: TC
Location: 34030 - 34512 (-)
Gene ID: HRGMv2_0991_15_31
Type: pfam
Location: 34549 - 34830 (-)
Gene ID: HRGMv2_0991_15_32
Type: TC
Location: 34830 - 35273 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0991_15_31 vegan > omnivore 1.00518 0.01287

🧭 Explore Read Mapping of CGC

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