Cluster: HRGMv2_0988_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0988
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0988_14 | HRGMv2_0988_14_2 | 1654 | 4065 | - | 9.B.144.1.5 |
| CAZyme | HRGMv2_0988_14 | HRGMv2_0988_14_3 | 4049 | 5017 | - | GT2 |
| CAZyme | HRGMv2_0988_14 | HRGMv2_0988_14_4 | 5024 | 5995 | - | GT81 |
| TC | HRGMv2_0988_14 | HRGMv2_0988_14_5 | 6156 | 7001 | + | 3.A.1.103.6 |
| TC | HRGMv2_0988_14 | HRGMv2_0988_14_6 | 7013 | 7780 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_0988_14_2
Type: TC
Location: 1654 - 4065 (-)
Type: TC
Location: 1654 - 4065 (-)
Gene ID: HRGMv2_0988_14_3
Type: CAZyme
Location: 4049 - 5017 (-)
Type: CAZyme
Location: 4049 - 5017 (-)
Gene ID: HRGMv2_0988_14_4
Type: CAZyme
Location: 5024 - 5995 (-)
Type: CAZyme
Location: 5024 - 5995 (-)
Gene ID: HRGMv2_0988_14_5
Type: TC
Location: 6156 - 7001 (+)
Type: TC
Location: 6156 - 7001 (+)
Gene ID: HRGMv2_0988_14_6
Type: TC
Location: 7013 - 7780 (+)
Type: TC
Location: 7013 - 7780 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_BA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.