Cluster: HRGMv2_0988_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0988
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0988_7 | HRGMv2_0988_7_10 | 11239 | 12258 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0988_7 | HRGMv2_0988_7_11 | 12268 | 13674 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0988_7 | HRGMv2_0988_7_12 | 13711 | 15204 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0988_7 | HRGMv2_0988_7_13 | 15194 | 16309 | + | GT28 |
Gene ID: HRGMv2_0988_7_10
Type: TC
Location: 11239 - 12258 (+)
Type: TC
Location: 11239 - 12258 (+)
Gene ID: HRGMv2_0988_7_11
Type: pfam
Location: 12268 - 13674 (+)
Type: pfam
Location: 12268 - 13674 (+)
Gene ID: HRGMv2_0988_7_12
Type: TC
Location: 13711 - 15204 (+)
Type: TC
Location: 13711 - 15204 (+)
Gene ID: HRGMv2_0988_7_13
Type: CAZyme
Location: 15194 - 16309 (+)
Type: CAZyme
Location: 15194 - 16309 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_BA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.