Cluster: HRGMv2_0988_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0988
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0988_1 | HRGMv2_0988_1_74 | 86403 | 88730 | - | 9.A.8.1.6 |
| TC | HRGMv2_0988_1 | HRGMv2_0988_1_75 | 88854 | 89075 | - | 9.A.8.1.6 |
| STP | HRGMv2_0988_1 | HRGMv2_0988_1_76 | 89115 | 89357 | - | FeoA |
| STP | HRGMv2_0988_1 | HRGMv2_0988_1_77 | 89544 | 89792 | - | PTS-HPr |
| TC | HRGMv2_0988_1 | HRGMv2_0988_1_78 | 90215 | 91678 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_0988_1 | HRGMv2_0988_1_79 | 91832 | 92287 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0988_1 | HRGMv2_0988_1_80 | 92291 | 95299 | - | GH2 |
Gene ID: HRGMv2_0988_1_74
Type: TC
Location: 86403 - 88730 (-)
Type: TC
Location: 86403 - 88730 (-)
Gene ID: HRGMv2_0988_1_75
Type: TC
Location: 88854 - 89075 (-)
Type: TC
Location: 88854 - 89075 (-)
Gene ID: HRGMv2_0988_1_76
Type: STP
Location: 89115 - 89357 (-)
Type: STP
Location: 89115 - 89357 (-)
Gene ID: HRGMv2_0988_1_77
Type: STP
Location: 89544 - 89792 (-)
Type: STP
Location: 89544 - 89792 (-)
Gene ID: HRGMv2_0988_1_78
Type: TC
Location: 90215 - 91678 (-)
Type: TC
Location: 90215 - 91678 (-)
Gene ID: HRGMv2_0988_1_79
Type:
Location: 91832 - 92287 (-)
Type:
Location: 91832 - 92287 (-)
Gene ID: HRGMv2_0988_1_80
Type: CAZyme
Location: 92291 - 95299 (-)
Type: CAZyme
Location: 92291 - 95299 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_BA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.