Cluster: HRGMv2_0988_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0988
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0988_48 | HRGMv2_0988_48_3 | 2101 | 2664 | - | 4.A.1.2.6 |
| peptidase | HRGMv2_0988_48 | HRGMv2_0988_48_4 | 2908 | 3807 | + | S09.UPW |
| NULL(UNKNOWN) | HRGMv2_0988_48 | HRGMv2_0988_48_5 | 3936 | 4277 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0988_48 | HRGMv2_0988_48_6 | 4348 | 6708 | + | 9.A.8.1.6 |
| TC | HRGMv2_0988_48 | HRGMv2_0988_48_7 | 6829 | 8025 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_0988_48 | HRGMv2_0988_48_8 | 8179 | 9555 | + | GH13_20 |
Gene ID: HRGMv2_0988_48_3
Type: TC
Location: 2101 - 2664 (-)
Type: TC
Location: 2101 - 2664 (-)
Gene ID: HRGMv2_0988_48_4
Type: peptidase
Location: 2908 - 3807 (+)
Type: peptidase
Location: 2908 - 3807 (+)
Gene ID: HRGMv2_0988_48_5
Type:
Location: 3936 - 4277 (+)
Type:
Location: 3936 - 4277 (+)
Gene ID: HRGMv2_0988_48_6
Type: TC
Location: 4348 - 6708 (+)
Type: TC
Location: 4348 - 6708 (+)
Gene ID: HRGMv2_0988_48_7
Type: TC
Location: 6829 - 8025 (+)
Type: TC
Location: 6829 - 8025 (+)
Gene ID: HRGMv2_0988_48_8
Type: CAZyme
Location: 8179 - 9555 (+)
Type: CAZyme
Location: 8179 - 9555 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_BA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.