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Cluster: HRGMv2_0988_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0988_27 HRGMv2_0988_27_13 12652 12990 - 4.A.3.1.2
TF HRGMv2_0988_27 HRGMv2_0988_27_14 13205 14209 - LacI
TC HRGMv2_0988_27 HRGMv2_0988_27_15 14567 16342 + 4.A.3.1.1
CAZyme HRGMv2_0988_27 HRGMv2_0988_27_16 16409 17848 + GH1
TF HRGMv2_0988_27 HRGMv2_0988_27_17 18125 19162 - LacI
CAZyme HRGMv2_0988_27 HRGMv2_0988_27_18 19504 20946 + GH1
TC HRGMv2_0988_27 HRGMv2_0988_27_19 21123 22883 + 4.A.3.1.1
TF HRGMv2_0988_27 HRGMv2_0988_27_20 23216 24217 - LacI
TC HRGMv2_0988_27 HRGMv2_0988_27_21 24504 26282 + 4.A.3.1.1
CAZyme HRGMv2_0988_27 HRGMv2_0988_27_22 26359 27780 + GH1
Gene ID: HRGMv2_0988_27_13
Type: TC
Location: 12652 - 12990 (-)
Gene ID: HRGMv2_0988_27_14
Type: TF
Location: 13205 - 14209 (-)
Gene ID: HRGMv2_0988_27_15
Type: TC
Location: 14567 - 16342 (+)
Gene ID: HRGMv2_0988_27_16
Type: CAZyme
Location: 16409 - 17848 (+)
Gene ID: HRGMv2_0988_27_17
Type: TF
Location: 18125 - 19162 (-)
Gene ID: HRGMv2_0988_27_18
Type: CAZyme
Location: 19504 - 20946 (+)
Gene ID: HRGMv2_0988_27_19
Type: TC
Location: 21123 - 22883 (+)
Gene ID: HRGMv2_0988_27_20
Type: TF
Location: 23216 - 24217 (-)
Gene ID: HRGMv2_0988_27_21
Type: TC
Location: 24504 - 26282 (+)
Gene ID: HRGMv2_0988_27_22
Type: CAZyme
Location: 26359 - 27780 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0988_27_17 vegetarian > omnivore 1.02566 0.02242

🧭 Explore Read Mapping of CGC

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