Cluster: HRGMv2_0988_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0988
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0988_1 | HRGMv2_0988_1_63 | 71061 | 72299 | - | GH105 |
| pfam | HRGMv2_0988_1 | HRGMv2_0988_1_64 | 72407 | 73075 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0988_1 | HRGMv2_0988_1_65 | 73145 | 75310 | - | CE19 | CE8 |
| peptidase | HRGMv2_0988_1 | HRGMv2_0988_1_66 | 75307 | 76116 | - | S09.UPW |
| CAZyme | HRGMv2_0988_1 | HRGMv2_0988_1_67 | 76212 | 77807 | - | GH28 |
| TC | HRGMv2_0988_1 | HRGMv2_0988_1_68 | 77922 | 79481 | - | 2.A.2.5.1 |
Gene ID: HRGMv2_0988_1_63
Type: CAZyme
Location: 71061 - 72299 (-)
Type: CAZyme
Location: 71061 - 72299 (-)
Gene ID: HRGMv2_0988_1_64
Type: pfam
Location: 72407 - 73075 (-)
Type: pfam
Location: 72407 - 73075 (-)
Gene ID: HRGMv2_0988_1_65
Type: CAZyme
Location: 73145 - 75310 (-)
Type: CAZyme
Location: 73145 - 75310 (-)
Gene ID: HRGMv2_0988_1_66
Type: peptidase
Location: 75307 - 76116 (-)
Type: peptidase
Location: 75307 - 76116 (-)
Gene ID: HRGMv2_0988_1_67
Type: CAZyme
Location: 76212 - 77807 (-)
Type: CAZyme
Location: 76212 - 77807 (-)
Gene ID: HRGMv2_0988_1_68
Type: TC
Location: 77922 - 79481 (-)
Type: TC
Location: 77922 - 79481 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_BA
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.