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Cluster: HRGMv2_0983_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0983_4 HRGMv2_0983_4_11 15757 17133 - GH13_20
TC HRGMv2_0983_4 HRGMv2_0983_4_12 17288 18484 - 2.A.1.2.18
pfam HRGMv2_0983_4 HRGMv2_0983_4_13 18588 19070 - tRNA_edit
TC HRGMv2_0983_4 HRGMv2_0983_4_14 19166 21523 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_0983_4 HRGMv2_0983_4_15 21645 21965 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_0983_4 HRGMv2_0983_4_16 22013 22912 - S09.UPW
TC HRGMv2_0983_4 HRGMv2_0983_4_17 23156 23719 + 4.A.1.2.6
pfam HRGMv2_0983_4 HRGMv2_0983_4_18 23901 25304 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_0983_4 HRGMv2_0983_4_19 25554 26339 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0983_4 HRGMv2_0983_4_20 26500 27480 + 3.A.1.34.1
TC HRGMv2_0983_4 HRGMv2_0983_4_21 27685 28608 + 3.A.1.34.1
TC HRGMv2_0983_4 HRGMv2_0983_4_22 28601 29395 + 3.A.1.34.1
pfam HRGMv2_0983_4 HRGMv2_0983_4_23 29553 31580 + Metallophos | 5_nucleotid_C
TC HRGMv2_0983_4 HRGMv2_0983_4_24 31709 32476 + 1.A.23.4.2
pfam HRGMv2_0983_4 HRGMv2_0983_4_25 32570 34486 + Bmp
pfam HRGMv2_0983_4 HRGMv2_0983_4_26 34483 35193 + Metallophos | Metallophos_2
TC HRGMv2_0983_4 HRGMv2_0983_4_27 35319 36026 - 1.C.82.1.1
Gene ID: HRGMv2_0983_4_11
Type: CAZyme
Location: 15757 - 17133 (-)
Gene ID: HRGMv2_0983_4_12
Type: TC
Location: 17288 - 18484 (-)
Gene ID: HRGMv2_0983_4_13
Type: pfam
Location: 18588 - 19070 (-)
Gene ID: HRGMv2_0983_4_14
Type: TC
Location: 19166 - 21523 (-)
Gene ID: HRGMv2_0983_4_15
Type:
Location: 21645 - 21965 (-)
Gene ID: HRGMv2_0983_4_16
Type: peptidase
Location: 22013 - 22912 (-)
Gene ID: HRGMv2_0983_4_17
Type: TC
Location: 23156 - 23719 (+)
Gene ID: HRGMv2_0983_4_18
Type: pfam
Location: 23901 - 25304 (+)
Gene ID: HRGMv2_0983_4_19
Type:
Location: 25554 - 26339 (+)
Gene ID: HRGMv2_0983_4_20
Type: TC
Location: 26500 - 27480 (+)
Gene ID: HRGMv2_0983_4_21
Type: TC
Location: 27685 - 28608 (+)
Gene ID: HRGMv2_0983_4_22
Type: TC
Location: 28601 - 29395 (+)
Gene ID: HRGMv2_0983_4_23
Type: pfam
Location: 29553 - 31580 (+)
Gene ID: HRGMv2_0983_4_24
Type: TC
Location: 31709 - 32476 (+)
Gene ID: HRGMv2_0983_4_25
Type: pfam
Location: 32570 - 34486 (+)
Gene ID: HRGMv2_0983_4_26
Type: pfam
Location: 34483 - 35193 (+)
Gene ID: HRGMv2_0983_4_27
Type: TC
Location: 35319 - 36026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0983_4_23 vegan > omnivore 2.01970 0.01165
HRGMv2_0983_4_23 vegetarian > omnivore 1.44573 0.00863

🧭 Explore Read Mapping of CGC

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