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Cluster: HRGMv2_0983_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0983_23 HRGMv2_0983_23_12 11057 12478 - GH1
TC HRGMv2_0983_23 HRGMv2_0983_23_13 12554 14311 - 4.A.3.1.1
TF HRGMv2_0983_23 HRGMv2_0983_23_14 14587 15597 + LacI
TC HRGMv2_0983_23 HRGMv2_0983_23_15 15771 17531 - 4.A.3.1.1
CAZyme HRGMv2_0983_23 HRGMv2_0983_23_16 17707 19149 - GH1
TF HRGMv2_0983_23 HRGMv2_0983_23_17 19491 20528 + LacI
CAZyme HRGMv2_0983_23 HRGMv2_0983_23_18 20806 22245 - GH1
TC HRGMv2_0983_23 HRGMv2_0983_23_19 22311 24083 - 4.A.3.1.1
TF HRGMv2_0983_23 HRGMv2_0983_23_20 24440 25444 + LacI
TC HRGMv2_0983_23 HRGMv2_0983_23_21 25659 25997 + 4.A.3.1.2
Gene ID: HRGMv2_0983_23_12
Type: CAZyme
Location: 11057 - 12478 (-)
Gene ID: HRGMv2_0983_23_13
Type: TC
Location: 12554 - 14311 (-)
Gene ID: HRGMv2_0983_23_14
Type: TF
Location: 14587 - 15597 (+)
Gene ID: HRGMv2_0983_23_15
Type: TC
Location: 15771 - 17531 (-)
Gene ID: HRGMv2_0983_23_16
Type: CAZyme
Location: 17707 - 19149 (-)
Gene ID: HRGMv2_0983_23_17
Type: TF
Location: 19491 - 20528 (+)
Gene ID: HRGMv2_0983_23_18
Type: CAZyme
Location: 20806 - 22245 (-)
Gene ID: HRGMv2_0983_23_19
Type: TC
Location: 22311 - 24083 (-)
Gene ID: HRGMv2_0983_23_20
Type: TF
Location: 24440 - 25444 (+)
Gene ID: HRGMv2_0983_23_21
Type: TC
Location: 25659 - 25997 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0983_23_17 vegetarian > omnivore 1.06951 0.00863

🧭 Explore Read Mapping of CGC

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