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Cluster: HRGMv2_0982_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0982_5 HRGMv2_0982_5_32 30420 30863 + 4.A.6.1.16
pfam HRGMv2_0982_5 HRGMv2_0982_5_33 30863 31144 + YajC
TC HRGMv2_0982_5 HRGMv2_0982_5_34 31181 31663 + 4.A.6.1.4
TC HRGMv2_0982_5 HRGMv2_0982_5_35 31754 32554 + 4.A.6.1.4
TC HRGMv2_0982_5 HRGMv2_0982_5_36 32544 33626 + 4.A.6.1.4
TF HRGMv2_0982_5 HRGMv2_0982_5_37 33811 34542 + GntR
STP HRGMv2_0982_5 HRGMv2_0982_5_38 34657 35823 + SIS | SIS
CAZyme HRGMv2_0982_5 HRGMv2_0982_5_39 35941 37110 + CE9
Gene ID: HRGMv2_0982_5_32
Type: TC
Location: 30420 - 30863 (+)
Gene ID: HRGMv2_0982_5_33
Type: pfam
Location: 30863 - 31144 (+)
Gene ID: HRGMv2_0982_5_34
Type: TC
Location: 31181 - 31663 (+)
Gene ID: HRGMv2_0982_5_35
Type: TC
Location: 31754 - 32554 (+)
Gene ID: HRGMv2_0982_5_36
Type: TC
Location: 32544 - 33626 (+)
Gene ID: HRGMv2_0982_5_37
Type: TF
Location: 33811 - 34542 (+)
Gene ID: HRGMv2_0982_5_38
Type: STP
Location: 34657 - 35823 (+)
Gene ID: HRGMv2_0982_5_39
Type: CAZyme
Location: 35941 - 37110 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0982_5_33 vegan > omnivore 1.01817 0.00861

🧭 Explore Read Mapping of CGC

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