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Cluster: HRGMv2_0981_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0981_2 HRGMv2_0981_2_6 4334 5503 - CE9
STP HRGMv2_0981_2 HRGMv2_0981_2_7 5622 6788 - SIS | SIS
TF HRGMv2_0981_2 HRGMv2_0981_2_8 6903 7634 - GntR
TC HRGMv2_0981_2 HRGMv2_0981_2_9 7820 8902 - 4.A.6.1.4
TC HRGMv2_0981_2 HRGMv2_0981_2_10 8892 9692 - 4.A.6.1.4
TC HRGMv2_0981_2 HRGMv2_0981_2_11 9783 10265 - 4.A.6.1.4
pfam HRGMv2_0981_2 HRGMv2_0981_2_12 10302 10583 - YajC
TC HRGMv2_0981_2 HRGMv2_0981_2_13 10583 11026 - 4.A.6.1.16
Gene ID: HRGMv2_0981_2_6
Type: CAZyme
Location: 4334 - 5503 (-)
Gene ID: HRGMv2_0981_2_7
Type: STP
Location: 5622 - 6788 (-)
Gene ID: HRGMv2_0981_2_8
Type: TF
Location: 6903 - 7634 (-)
Gene ID: HRGMv2_0981_2_9
Type: TC
Location: 7820 - 8902 (-)
Gene ID: HRGMv2_0981_2_10
Type: TC
Location: 8892 - 9692 (-)
Gene ID: HRGMv2_0981_2_11
Type: TC
Location: 9783 - 10265 (-)
Gene ID: HRGMv2_0981_2_12
Type: pfam
Location: 10302 - 10583 (-)
Gene ID: HRGMv2_0981_2_13
Type: TC
Location: 10583 - 11026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0981_2_12 vegan > omnivore 1.06009 0.00863

🧭 Explore Read Mapping of CGC

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