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Cluster: HRGMv2_0980_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0980_2 HRGMv2_0980_2_108 109403 110824 - GH1
TC HRGMv2_0980_2 HRGMv2_0980_2_109 110900 112678 - 4.A.3.1.1
TF HRGMv2_0980_2 HRGMv2_0980_2_110 112963 113964 + LacI
TC HRGMv2_0980_2 HRGMv2_0980_2_111 114217 115977 - 4.A.3.1.1
CAZyme HRGMv2_0980_2 HRGMv2_0980_2_112 116154 117596 - GH1
TF HRGMv2_0980_2 HRGMv2_0980_2_113 117938 118975 + LacI
CAZyme HRGMv2_0980_2 HRGMv2_0980_2_114 119252 120691 - GH1
TC HRGMv2_0980_2 HRGMv2_0980_2_115 120758 122524 - 4.A.3.1.1
TF HRGMv2_0980_2 HRGMv2_0980_2_116 122882 123886 + LacI
TC HRGMv2_0980_2 HRGMv2_0980_2_117 124100 124438 + 4.A.3.1.2
Gene ID: HRGMv2_0980_2_108
Type: CAZyme
Location: 109403 - 110824 (-)
Gene ID: HRGMv2_0980_2_109
Type: TC
Location: 110900 - 112678 (-)
Gene ID: HRGMv2_0980_2_110
Type: TF
Location: 112963 - 113964 (+)
Gene ID: HRGMv2_0980_2_111
Type: TC
Location: 114217 - 115977 (-)
Gene ID: HRGMv2_0980_2_112
Type: CAZyme
Location: 116154 - 117596 (-)
Gene ID: HRGMv2_0980_2_113
Type: TF
Location: 117938 - 118975 (+)
Gene ID: HRGMv2_0980_2_114
Type: CAZyme
Location: 119252 - 120691 (-)
Gene ID: HRGMv2_0980_2_115
Type: TC
Location: 120758 - 122524 (-)
Gene ID: HRGMv2_0980_2_116
Type: TF
Location: 122882 - 123886 (+)
Gene ID: HRGMv2_0980_2_117
Type: TC
Location: 124100 - 124438 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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