Cluster: HRGMv2_0979_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0979
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0979_42 | HRGMv2_0979_42_4 | 2407 | 3783 | - | GH13_20 |
| TC | HRGMv2_0979_42 | HRGMv2_0979_42_5 | 3937 | 5133 | - | 2.A.1.2.18 |
| NULL(UNKNOWN) | HRGMv2_0979_42 | HRGMv2_0979_42_6 | 5309 | 6061 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0979_42 | HRGMv2_0979_42_7 | 6227 | 7600 | - | GH4 |
| TF | HRGMv2_0979_42 | HRGMv2_0979_42_8 | 7776 | 8528 | + | HTH_6 |
| TC | HRGMv2_0979_42 | HRGMv2_0979_42_9 | 8591 | 10255 | - | 4.A.1.1.3 |
| TC | HRGMv2_0979_42 | HRGMv2_0979_42_10 | 10570 | 12930 | - | 9.A.8.1.6 |
Gene ID: HRGMv2_0979_42_4
Type: CAZyme
Location: 2407 - 3783 (-)
Type: CAZyme
Location: 2407 - 3783 (-)
Gene ID: HRGMv2_0979_42_5
Type: TC
Location: 3937 - 5133 (-)
Type: TC
Location: 3937 - 5133 (-)
Gene ID: HRGMv2_0979_42_6
Type:
Location: 5309 - 6061 (-)
Type:
Location: 5309 - 6061 (-)
Gene ID: HRGMv2_0979_42_7
Type: CAZyme
Location: 6227 - 7600 (-)
Type: CAZyme
Location: 6227 - 7600 (-)
Gene ID: HRGMv2_0979_42_8
Type: TF
Location: 7776 - 8528 (+)
Type: TF
Location: 7776 - 8528 (+)
Gene ID: HRGMv2_0979_42_9
Type: TC
Location: 8591 - 10255 (-)
Type: TC
Location: 8591 - 10255 (-)
Gene ID: HRGMv2_0979_42_10
Type: TC
Location: 10570 - 12930 (-)
Type: TC
Location: 10570 - 12930 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0979_42_6 | vegan > omnivore | 1.56025 | 0.00566 |
| HRGMv2_0979_42_7 | vegan > omnivore | 1.44280 | 0.00566 |