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Cluster: HRGMv2_0979_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0979_30 HRGMv2_0979_30_9 7071 7514 + 4.A.6.1.16
pfam HRGMv2_0979_30 HRGMv2_0979_30_10 7514 7795 + YajC
TC HRGMv2_0979_30 HRGMv2_0979_30_11 7832 8314 + 4.A.6.1.4
TC HRGMv2_0979_30 HRGMv2_0979_30_12 8405 9205 + 4.A.6.1.4
TC HRGMv2_0979_30 HRGMv2_0979_30_13 9195 10277 + 4.A.6.1.4
TF HRGMv2_0979_30 HRGMv2_0979_30_14 10462 11193 + GntR
STP HRGMv2_0979_30 HRGMv2_0979_30_15 11308 12474 + SIS | SIS
CAZyme HRGMv2_0979_30 HRGMv2_0979_30_16 12593 13762 + CE9
Gene ID: HRGMv2_0979_30_9
Type: TC
Location: 7071 - 7514 (+)
Gene ID: HRGMv2_0979_30_10
Type: pfam
Location: 7514 - 7795 (+)
Gene ID: HRGMv2_0979_30_11
Type: TC
Location: 7832 - 8314 (+)
Gene ID: HRGMv2_0979_30_12
Type: TC
Location: 8405 - 9205 (+)
Gene ID: HRGMv2_0979_30_13
Type: TC
Location: 9195 - 10277 (+)
Gene ID: HRGMv2_0979_30_14
Type: TF
Location: 10462 - 11193 (+)
Gene ID: HRGMv2_0979_30_15
Type: STP
Location: 11308 - 12474 (+)
Gene ID: HRGMv2_0979_30_16
Type: CAZyme
Location: 12593 - 13762 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0979_30_10 vegan > omnivore 1.01874 0.00566

🧭 Explore Read Mapping of CGC

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