Cluster: HRGMv2_0978_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0978_10 | HRGMv2_0978_10_40 | 53214 | 56222 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0978_10 | HRGMv2_0978_10_41 | 56226 | 56681 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0978_10 | HRGMv2_0978_10_42 | 56835 | 58148 | + | 2.A.3.7.4 |
| STP | HRGMv2_0978_10 | HRGMv2_0978_10_43 | 58721 | 58969 | + | PTS-HPr |
| STP | HRGMv2_0978_10 | HRGMv2_0978_10_44 | 59202 | 59444 | + | FeoA |
| TC | HRGMv2_0978_10 | HRGMv2_0978_10_45 | 59484 | 59705 | + | 9.A.8.1.6 |
| TC | HRGMv2_0978_10 | HRGMv2_0978_10_46 | 59829 | 62156 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_0978_10_40
Type: CAZyme
Location: 53214 - 56222 (+)
Type: CAZyme
Location: 53214 - 56222 (+)
Gene ID: HRGMv2_0978_10_41
Type:
Location: 56226 - 56681 (+)
Type:
Location: 56226 - 56681 (+)
Gene ID: HRGMv2_0978_10_42
Type: TC
Location: 56835 - 58148 (+)
Type: TC
Location: 56835 - 58148 (+)
Gene ID: HRGMv2_0978_10_43
Type: STP
Location: 58721 - 58969 (+)
Type: STP
Location: 58721 - 58969 (+)
Gene ID: HRGMv2_0978_10_44
Type: STP
Location: 59202 - 59444 (+)
Type: STP
Location: 59202 - 59444 (+)
Gene ID: HRGMv2_0978_10_45
Type: TC
Location: 59484 - 59705 (+)
Type: TC
Location: 59484 - 59705 (+)
Gene ID: HRGMv2_0978_10_46
Type: TC
Location: 59829 - 62156 (+)
Type: TC
Location: 59829 - 62156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.