Cluster: HRGMv2_0978_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0978_7 | HRGMv2_0978_7_3 | 1984 | 2979 | - | GT2 |
| pfam | HRGMv2_0978_7 | HRGMv2_0978_7_4 | 2972 | 4087 | - | EpsG |
| pfam | HRGMv2_0978_7 | HRGMv2_0978_7_5 | 4087 | 4257 | - | Glycos_transf_2 |
| CAZyme | HRGMv2_0978_7 | HRGMv2_0978_7_6 | 4284 | 5276 | - | GT2 |
| CAZyme | HRGMv2_0978_7 | HRGMv2_0978_7_7 | 5281 | 6105 | - | GT2 |
| TC | HRGMv2_0978_7 | HRGMv2_0978_7_8 | 6108 | 6878 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_0978_7_3
Type: CAZyme
Location: 1984 - 2979 (-)
Type: CAZyme
Location: 1984 - 2979 (-)
Gene ID: HRGMv2_0978_7_4
Type: pfam
Location: 2972 - 4087 (-)
Type: pfam
Location: 2972 - 4087 (-)
Gene ID: HRGMv2_0978_7_5
Type: pfam
Location: 4087 - 4257 (-)
Type: pfam
Location: 4087 - 4257 (-)
Gene ID: HRGMv2_0978_7_6
Type: CAZyme
Location: 4284 - 5276 (-)
Type: CAZyme
Location: 4284 - 5276 (-)
Gene ID: HRGMv2_0978_7_7
Type: CAZyme
Location: 5281 - 6105 (-)
Type: CAZyme
Location: 5281 - 6105 (-)
Gene ID: HRGMv2_0978_7_8
Type: TC
Location: 6108 - 6878 (-)
Type: TC
Location: 6108 - 6878 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.