Cluster: HRGMv2_0978_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0978_5 | HRGMv2_0978_5_3 | 2841 | 3860 | + | 9.B.146.1.6 |
| pfam | HRGMv2_0978_5 | HRGMv2_0978_5_4 | 3870 | 5276 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0978_5 | HRGMv2_0978_5_5 | 5313 | 6806 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_0978_5 | HRGMv2_0978_5_6 | 6796 | 7911 | + | GT28 |
Gene ID: HRGMv2_0978_5_3
Type: TC
Location: 2841 - 3860 (+)
Type: TC
Location: 2841 - 3860 (+)
Gene ID: HRGMv2_0978_5_4
Type: pfam
Location: 3870 - 5276 (+)
Type: pfam
Location: 3870 - 5276 (+)
Gene ID: HRGMv2_0978_5_5
Type: TC
Location: 5313 - 6806 (+)
Type: TC
Location: 5313 - 6806 (+)
Gene ID: HRGMv2_0978_5_6
Type: CAZyme
Location: 6796 - 7911 (+)
Type: CAZyme
Location: 6796 - 7911 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.