Cluster: HRGMv2_0978_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- CGC Family ID: CGCFAM_00615
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0978_4 | HRGMv2_0978_4_75 | 76439 | 78172 | - | GH13_30 |
| STP | HRGMv2_0978_4 | HRGMv2_0978_4_76 | 78757 | 79503 | - | STAS |
| STP | HRGMv2_0978_4 | HRGMv2_0978_4_77 | 79585 | 81930 | - | GAF | SpoIIE |
| TC | HRGMv2_0978_4 | HRGMv2_0978_4_78 | 82679 | 83707 | - | 3.A.1.5.36 |
| TC | HRGMv2_0978_4 | HRGMv2_0978_4_79 | 83707 | 84798 | - | 3.A.1.5.34 |
Gene ID: HRGMv2_0978_4_75
Type: CAZyme
Location: 76439 - 78172 (-)
Type: CAZyme
Location: 76439 - 78172 (-)
Gene ID: HRGMv2_0978_4_76
Type: STP
Location: 78757 - 79503 (-)
Type: STP
Location: 78757 - 79503 (-)
Gene ID: HRGMv2_0978_4_77
Type: STP
Location: 79585 - 81930 (-)
Type: STP
Location: 79585 - 81930 (-)
Gene ID: HRGMv2_0978_4_78
Type: TC
Location: 82679 - 83707 (-)
Type: TC
Location: 82679 - 83707 (-)
Gene ID: HRGMv2_0978_4_79
Type: TC
Location: 83707 - 84798 (-)
Type: TC
Location: 83707 - 84798 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.