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Cluster: HRGMv2_0978_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0978_3 HRGMv2_0978_3_26 25050 26744 + 4.A.3.1.1
STP HRGMv2_0978_3 HRGMv2_0978_3_27 26907 27236 + DeoRC
pfam HRGMv2_0978_3 HRGMv2_0978_3_28 27285 28517 - Fic
CAZyme HRGMv2_0978_3 HRGMv2_0978_3_29 28883 30304 - GH1
TC HRGMv2_0978_3 HRGMv2_0978_3_30 30381 32159 - 4.A.3.1.1
TF HRGMv2_0978_3 HRGMv2_0978_3_31 32436 33446 + LacI
TC HRGMv2_0978_3 HRGMv2_0978_3_32 33781 35541 - 4.A.3.1.1
CAZyme HRGMv2_0978_3 HRGMv2_0978_3_33 35718 37160 - GH1
TF HRGMv2_0978_3 HRGMv2_0978_3_34 37502 38539 + LacI
CAZyme HRGMv2_0978_3 HRGMv2_0978_3_35 38801 40240 - GH1
TC HRGMv2_0978_3 HRGMv2_0978_3_36 40307 42082 - 4.A.3.1.1
TF HRGMv2_0978_3 HRGMv2_0978_3_37 42440 43444 + LacI
TC HRGMv2_0978_3 HRGMv2_0978_3_38 43660 43998 + 4.A.3.1.2
Gene ID: HRGMv2_0978_3_26
Type: TC
Location: 25050 - 26744 (+)
Gene ID: HRGMv2_0978_3_27
Type: STP
Location: 26907 - 27236 (+)
Gene ID: HRGMv2_0978_3_28
Type: pfam
Location: 27285 - 28517 (-)
Gene ID: HRGMv2_0978_3_29
Type: CAZyme
Location: 28883 - 30304 (-)
Gene ID: HRGMv2_0978_3_30
Type: TC
Location: 30381 - 32159 (-)
Gene ID: HRGMv2_0978_3_31
Type: TF
Location: 32436 - 33446 (+)
Gene ID: HRGMv2_0978_3_32
Type: TC
Location: 33781 - 35541 (-)
Gene ID: HRGMv2_0978_3_33
Type: CAZyme
Location: 35718 - 37160 (-)
Gene ID: HRGMv2_0978_3_34
Type: TF
Location: 37502 - 38539 (+)
Gene ID: HRGMv2_0978_3_35
Type: CAZyme
Location: 38801 - 40240 (-)
Gene ID: HRGMv2_0978_3_36
Type: TC
Location: 40307 - 42082 (-)
Gene ID: HRGMv2_0978_3_37
Type: TF
Location: 42440 - 43444 (+)
Gene ID: HRGMv2_0978_3_38
Type: TC
Location: 43660 - 43998 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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