Cluster: HRGMv2_0978_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- CGC Family ID: CGCFAM_00467
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0978_2 | HRGMv2_0978_2_49 | 57110 | 58573 | + | 2.A.3.2.3 |
| pfam | HRGMv2_0978_2 | HRGMv2_0978_2_50 | 58850 | 60073 | - | Zn_Ribbon_1 |
| TC | HRGMv2_0978_2 | HRGMv2_0978_2_51 | 60587 | 62947 | + | 9.A.8.1.6 |
| TC | HRGMv2_0978_2 | HRGMv2_0978_2_52 | 63069 | 64265 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_0978_2 | HRGMv2_0978_2_53 | 64419 | 65795 | + | GH13_20 |
Gene ID: HRGMv2_0978_2_49
Type: TC
Location: 57110 - 58573 (+)
Type: TC
Location: 57110 - 58573 (+)
Gene ID: HRGMv2_0978_2_50
Type: pfam
Location: 58850 - 60073 (-)
Type: pfam
Location: 58850 - 60073 (-)
Gene ID: HRGMv2_0978_2_51
Type: TC
Location: 60587 - 62947 (+)
Type: TC
Location: 60587 - 62947 (+)
Gene ID: HRGMv2_0978_2_52
Type: TC
Location: 63069 - 64265 (+)
Type: TC
Location: 63069 - 64265 (+)
Gene ID: HRGMv2_0978_2_53
Type: CAZyme
Location: 64419 - 65795 (+)
Type: CAZyme
Location: 64419 - 65795 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0978_2_49 | vegan > omnivore | 1.65270 | 0.01882 |