Cluster: HRGMv2_0978_CGC15
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0978_44 | HRGMv2_0978_44_10 | 9513 | 11075 | + | 4.A.1.1.16 |
| NULL(UNKNOWN) | HRGMv2_0978_44 | HRGMv2_0978_44_11 | 11114 | 11383 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0978_44 | HRGMv2_0978_44_12 | 11403 | 12731 | + | GH4 |
Gene ID: HRGMv2_0978_44_10
Type: TC
Location: 9513 - 11075 (+)
Type: TC
Location: 9513 - 11075 (+)
Gene ID: HRGMv2_0978_44_11
Type:
Location: 11114 - 11383 (+)
Type:
Location: 11114 - 11383 (+)
Gene ID: HRGMv2_0978_44_12
Type: CAZyme
Location: 11403 - 12731 (+)
Type: CAZyme
Location: 11403 - 12731 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.