Cluster: HRGMv2_0978_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0978_43 | HRGMv2_0978_43_3 | 2268 | 4484 | + | 9.B.97.5.1 |
| TC | HRGMv2_0978_43 | HRGMv2_0978_43_4 | 5032 | 6294 | - | 2.A.55.3.6 |
| STP | HRGMv2_0978_43 | HRGMv2_0978_43_5 | 6303 | 8147 | - | CBS | CBS |
| CAZyme | HRGMv2_0978_43 | HRGMv2_0978_43_6 | 8468 | 9874 | - | CE4 |
Gene ID: HRGMv2_0978_43_3
Type: TC
Location: 2268 - 4484 (+)
Type: TC
Location: 2268 - 4484 (+)
Gene ID: HRGMv2_0978_43_4
Type: TC
Location: 5032 - 6294 (-)
Type: TC
Location: 5032 - 6294 (-)
Gene ID: HRGMv2_0978_43_5
Type: STP
Location: 6303 - 8147 (-)
Type: STP
Location: 6303 - 8147 (-)
Gene ID: HRGMv2_0978_43_6
Type: CAZyme
Location: 8468 - 9874 (-)
Type: CAZyme
Location: 8468 - 9874 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.