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Cluster: HRGMv2_0978_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0978_28 HRGMv2_0978_28_11 15063 17513 - 4.A.1.1.8
TF HRGMv2_0978_28 HRGMv2_0978_28_12 17743 18462 + GntR
TC HRGMv2_0978_28 HRGMv2_0978_28_13 18769 20085 + 3.A.1.1.45
TC HRGMv2_0978_28 HRGMv2_0978_28_14 20173 21027 + 3.A.1.1.45
TC HRGMv2_0978_28 HRGMv2_0978_28_15 21027 21866 + 3.A.1.1.45
TC HRGMv2_0978_28 HRGMv2_0978_28_16 21935 23134 + 3.A.1.1.22
CAZyme HRGMv2_0978_28 HRGMv2_0978_28_17 23592 25859 - GT35
CAZyme HRGMv2_0978_28 HRGMv2_0978_28_18 25988 27493 - GH77
Gene ID: HRGMv2_0978_28_11
Type: TC
Location: 15063 - 17513 (-)
Gene ID: HRGMv2_0978_28_12
Type: TF
Location: 17743 - 18462 (+)
Gene ID: HRGMv2_0978_28_13
Type: TC
Location: 18769 - 20085 (+)
Gene ID: HRGMv2_0978_28_14
Type: TC
Location: 20173 - 21027 (+)
Gene ID: HRGMv2_0978_28_15
Type: TC
Location: 21027 - 21866 (+)
Gene ID: HRGMv2_0978_28_16
Type: TC
Location: 21935 - 23134 (+)
Gene ID: HRGMv2_0978_28_17
Type: CAZyme
Location: 23592 - 25859 (-)
Gene ID: HRGMv2_0978_28_18
Type: CAZyme
Location: 25988 - 27493 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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