Cluster: HRGMv2_0978_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0978_27 | HRGMv2_0978_27_5 | 5121 | 5837 | - | 9.B.143.2.3 |
| pfam | HRGMv2_0978_27 | HRGMv2_0978_27_6 | 6088 | 8229 | + | Radical_SAM_N | DUF3362 |
| TC | HRGMv2_0978_27 | HRGMv2_0978_27_7 | 8356 | 9726 | - | 4.A.1.2.11 |
| CAZyme | HRGMv2_0978_27 | HRGMv2_0978_27_8 | 9738 | 11216 | - | GH1 |
Gene ID: HRGMv2_0978_27_5
Type: TC
Location: 5121 - 5837 (-)
Type: TC
Location: 5121 - 5837 (-)
Gene ID: HRGMv2_0978_27_6
Type: pfam
Location: 6088 - 8229 (+)
Type: pfam
Location: 6088 - 8229 (+)
Gene ID: HRGMv2_0978_27_7
Type: TC
Location: 8356 - 9726 (-)
Type: TC
Location: 8356 - 9726 (-)
Gene ID: HRGMv2_0978_27_8
Type: CAZyme
Location: 9738 - 11216 (-)
Type: CAZyme
Location: 9738 - 11216 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0978_27_7 | vegan > omnivore | 1.12174 | 0.01882 |
| HRGMv2_0978_27_8 | vegan > omnivore | 1.19957 | 0.01882 |