Cluster: HRGMv2_0978_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0978
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0978_1 | HRGMv2_0978_1_121 | 124416 | 125183 | - | 3.A.1.103.1 |
| TC | HRGMv2_0978_1 | HRGMv2_0978_1_122 | 125195 | 126040 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_0978_1 | HRGMv2_0978_1_123 | 126201 | 127172 | + | GT81 |
Gene ID: HRGMv2_0978_1_121
Type: TC
Location: 124416 - 125183 (-)
Type: TC
Location: 124416 - 125183 (-)
Gene ID: HRGMv2_0978_1_122
Type: TC
Location: 125195 - 126040 (-)
Type: TC
Location: 125195 - 126040 (-)
Gene ID: HRGMv2_0978_1_123
Type: CAZyme
Location: 126201 - 127172 (+)
Type: CAZyme
Location: 126201 - 127172 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella aerofaciens_AU
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.