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Cluster: HRGMv2_0977_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0977_15 HRGMv2_0977_15_19 20813 21739 - CE7
TC HRGMv2_0977_15 HRGMv2_0977_15_20 21871 22698 - 3.A.1.5.27
TC HRGMv2_0977_15 HRGMv2_0977_15_21 22699 24714 - 3.A.1.5.25
TC HRGMv2_0977_15 HRGMv2_0977_15_22 24718 25674 - 3.A.1.5.38
TC HRGMv2_0977_15 HRGMv2_0977_15_23 25830 27443 - 3.A.1.5.27
pfam HRGMv2_0977_15 HRGMv2_0977_15_24 27809 29749 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_0977_15 HRGMv2_0977_15_25 29756 32059 - 2.A.66.4.4
pfam HRGMv2_0977_15 HRGMv2_0977_15_26 32063 32563 - tRNA_edit
pfam HRGMv2_0977_15 HRGMv2_0977_15_27 32697 35576 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_0977_15 HRGMv2_0977_15_28 35836 36666 + 3.A.1.132.3
Gene ID: HRGMv2_0977_15_19
Type: CAZyme
Location: 20813 - 21739 (-)
Gene ID: HRGMv2_0977_15_20
Type: TC
Location: 21871 - 22698 (-)
Gene ID: HRGMv2_0977_15_21
Type: TC
Location: 22699 - 24714 (-)
Gene ID: HRGMv2_0977_15_22
Type: TC
Location: 24718 - 25674 (-)
Gene ID: HRGMv2_0977_15_23
Type: TC
Location: 25830 - 27443 (-)
Gene ID: HRGMv2_0977_15_24
Type: pfam
Location: 27809 - 29749 (-)
Gene ID: HRGMv2_0977_15_25
Type: TC
Location: 29756 - 32059 (-)
Gene ID: HRGMv2_0977_15_26
Type: pfam
Location: 32063 - 32563 (-)
Gene ID: HRGMv2_0977_15_27
Type: pfam
Location: 32697 - 35576 (-)
Gene ID: HRGMv2_0977_15_28
Type: TC
Location: 35836 - 36666 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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