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Cluster: HRGMv2_0977_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0977_10 HRGMv2_0977_10_1 95 514 + 4.A.3.1.3
STP HRGMv2_0977_10 HRGMv2_0977_10_2 677 1060 + DeoRC
pfam HRGMv2_0977_10 HRGMv2_0977_10_3 1057 2289 - Fic
CAZyme HRGMv2_0977_10 HRGMv2_0977_10_4 2658 4079 - GH1
TC HRGMv2_0977_10 HRGMv2_0977_10_5 4156 5934 - 4.A.3.1.1
TF HRGMv2_0977_10 HRGMv2_0977_10_6 6210 7220 + LacI
TC HRGMv2_0977_10 HRGMv2_0977_10_7 7478 9238 - 4.A.3.1.1
CAZyme HRGMv2_0977_10 HRGMv2_0977_10_8 9415 10857 - GH1
TF HRGMv2_0977_10 HRGMv2_0977_10_9 11199 12236 + LacI
CAZyme HRGMv2_0977_10 HRGMv2_0977_10_10 12504 13943 - GH1
TC HRGMv2_0977_10 HRGMv2_0977_10_11 14010 15785 - 4.A.3.1.1
TF HRGMv2_0977_10 HRGMv2_0977_10_12 16143 17147 + LacI
TC HRGMv2_0977_10 HRGMv2_0977_10_13 17362 17700 + 4.A.3.1.2
Gene ID: HRGMv2_0977_10_1
Type: TC
Location: 95 - 514 (+)
Gene ID: HRGMv2_0977_10_2
Type: STP
Location: 677 - 1060 (+)
Gene ID: HRGMv2_0977_10_3
Type: pfam
Location: 1057 - 2289 (-)
Gene ID: HRGMv2_0977_10_4
Type: CAZyme
Location: 2658 - 4079 (-)
Gene ID: HRGMv2_0977_10_5
Type: TC
Location: 4156 - 5934 (-)
Gene ID: HRGMv2_0977_10_6
Type: TF
Location: 6210 - 7220 (+)
Gene ID: HRGMv2_0977_10_7
Type: TC
Location: 7478 - 9238 (-)
Gene ID: HRGMv2_0977_10_8
Type: CAZyme
Location: 9415 - 10857 (-)
Gene ID: HRGMv2_0977_10_9
Type: TF
Location: 11199 - 12236 (+)
Gene ID: HRGMv2_0977_10_10
Type: CAZyme
Location: 12504 - 13943 (-)
Gene ID: HRGMv2_0977_10_11
Type: TC
Location: 14010 - 15785 (-)
Gene ID: HRGMv2_0977_10_12
Type: TF
Location: 16143 - 17147 (+)
Gene ID: HRGMv2_0977_10_13
Type: TC
Location: 17362 - 17700 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0977_10_9 vegetarian > omnivore 1.07323 0.02677

🧭 Explore Read Mapping of CGC

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