Cluster: HRGMv2_0977_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0977
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0977_1 | HRGMv2_0977_1_49 | 52054 | 53517 | + | 2.A.3.2.3 |
| NULL(UNKNOWN) | HRGMv2_0977_1 | HRGMv2_0977_1_50 | 53979 | 54299 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0977_1 | HRGMv2_0977_1_51 | 54421 | 56781 | + | 9.A.8.1.6 |
| TC | HRGMv2_0977_1 | HRGMv2_0977_1_52 | 56903 | 58099 | + | 2.A.1.2.18 |
| CAZyme | HRGMv2_0977_1 | HRGMv2_0977_1_53 | 58254 | 59630 | + | GH13_20 |
Gene ID: HRGMv2_0977_1_49
Type: TC
Location: 52054 - 53517 (+)
Type: TC
Location: 52054 - 53517 (+)
Gene ID: HRGMv2_0977_1_50
Type:
Location: 53979 - 54299 (+)
Type:
Location: 53979 - 54299 (+)
Gene ID: HRGMv2_0977_1_51
Type: TC
Location: 54421 - 56781 (+)
Type: TC
Location: 54421 - 56781 (+)
Gene ID: HRGMv2_0977_1_52
Type: TC
Location: 56903 - 58099 (+)
Type: TC
Location: 56903 - 58099 (+)
Gene ID: HRGMv2_0977_1_53
Type: CAZyme
Location: 58254 - 59630 (+)
Type: CAZyme
Location: 58254 - 59630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp958369225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0977_1_49 | vegan > omnivore | 1.46359 | 0.00701 |