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Cluster: HRGMv2_0976_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0976_48 HRGMv2_0976_48_2 1526 1969 + 4.A.6.1.16
pfam HRGMv2_0976_48 HRGMv2_0976_48_3 1969 2250 + YajC
TC HRGMv2_0976_48 HRGMv2_0976_48_4 2287 2769 + 4.A.6.1.4
TC HRGMv2_0976_48 HRGMv2_0976_48_5 2860 3660 + 4.A.6.1.4
TC HRGMv2_0976_48 HRGMv2_0976_48_6 3650 4732 + 4.A.6.1.4
TF HRGMv2_0976_48 HRGMv2_0976_48_7 4918 5649 + GntR
STP HRGMv2_0976_48 HRGMv2_0976_48_8 5764 6930 + SIS | SIS
CAZyme HRGMv2_0976_48 HRGMv2_0976_48_9 7048 8217 + CE9
Gene ID: HRGMv2_0976_48_2
Type: TC
Location: 1526 - 1969 (+)
Gene ID: HRGMv2_0976_48_3
Type: pfam
Location: 1969 - 2250 (+)
Gene ID: HRGMv2_0976_48_4
Type: TC
Location: 2287 - 2769 (+)
Gene ID: HRGMv2_0976_48_5
Type: TC
Location: 2860 - 3660 (+)
Gene ID: HRGMv2_0976_48_6
Type: TC
Location: 3650 - 4732 (+)
Gene ID: HRGMv2_0976_48_7
Type: TF
Location: 4918 - 5649 (+)
Gene ID: HRGMv2_0976_48_8
Type: STP
Location: 5764 - 6930 (+)
Gene ID: HRGMv2_0976_48_9
Type: CAZyme
Location: 7048 - 8217 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0976_48_3 vegan > omnivore 1.01822 0.01287

🧭 Explore Read Mapping of CGC

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