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Cluster: HRGMv2_0974_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0974_36 HRGMv2_0974_36_2 1352 1795 + 4.A.6.1.16
pfam HRGMv2_0974_36 HRGMv2_0974_36_3 1795 2076 + YajC
TC HRGMv2_0974_36 HRGMv2_0974_36_4 2113 2595 + 4.A.6.1.4
TC HRGMv2_0974_36 HRGMv2_0974_36_5 2686 3486 + 4.A.6.1.4
TC HRGMv2_0974_36 HRGMv2_0974_36_6 3476 4558 + 4.A.6.1.4
TF HRGMv2_0974_36 HRGMv2_0974_36_7 4744 5475 + GntR
STP HRGMv2_0974_36 HRGMv2_0974_36_8 5590 6756 + SIS | SIS
CAZyme HRGMv2_0974_36 HRGMv2_0974_36_9 6874 8043 + CE9
Gene ID: HRGMv2_0974_36_2
Type: TC
Location: 1352 - 1795 (+)
Gene ID: HRGMv2_0974_36_3
Type: pfam
Location: 1795 - 2076 (+)
Gene ID: HRGMv2_0974_36_4
Type: TC
Location: 2113 - 2595 (+)
Gene ID: HRGMv2_0974_36_5
Type: TC
Location: 2686 - 3486 (+)
Gene ID: HRGMv2_0974_36_6
Type: TC
Location: 3476 - 4558 (+)
Gene ID: HRGMv2_0974_36_7
Type: TF
Location: 4744 - 5475 (+)
Gene ID: HRGMv2_0974_36_8
Type: STP
Location: 5590 - 6756 (+)
Gene ID: HRGMv2_0974_36_9
Type: CAZyme
Location: 6874 - 8043 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0974_36_3 vegan > omnivore 1.08687 0.00701

🧭 Explore Read Mapping of CGC

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