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Cluster: HRGMv2_0974_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0974_27 HRGMv2_0974_27_5 4495 6189 + 4.A.3.1.1
STP HRGMv2_0974_27 HRGMv2_0974_27_6 6352 6693 + DeoRC
pfam HRGMv2_0974_27 HRGMv2_0974_27_7 6731 7963 - Fic
CAZyme HRGMv2_0974_27 HRGMv2_0974_27_8 8330 9751 - GH1
TC HRGMv2_0974_27 HRGMv2_0974_27_9 9827 11605 - 4.A.3.1.1
TF HRGMv2_0974_27 HRGMv2_0974_27_10 11890 12891 + LacI
TC HRGMv2_0974_27 HRGMv2_0974_27_11 13229 14989 - 4.A.3.1.1
CAZyme HRGMv2_0974_27 HRGMv2_0974_27_12 15166 16608 - GH1
TF HRGMv2_0974_27 HRGMv2_0974_27_13 16950 17987 + LacI
CAZyme HRGMv2_0974_27 HRGMv2_0974_27_14 18268 19707 - GH1
TC HRGMv2_0974_27 HRGMv2_0974_27_15 19774 21549 - 4.A.3.1.1
TF HRGMv2_0974_27 HRGMv2_0974_27_16 21907 22911 + LacI
TC HRGMv2_0974_27 HRGMv2_0974_27_17 23126 23464 + 4.A.3.1.2
Gene ID: HRGMv2_0974_27_5
Type: TC
Location: 4495 - 6189 (+)
Gene ID: HRGMv2_0974_27_6
Type: STP
Location: 6352 - 6693 (+)
Gene ID: HRGMv2_0974_27_7
Type: pfam
Location: 6731 - 7963 (-)
Gene ID: HRGMv2_0974_27_8
Type: CAZyme
Location: 8330 - 9751 (-)
Gene ID: HRGMv2_0974_27_9
Type: TC
Location: 9827 - 11605 (-)
Gene ID: HRGMv2_0974_27_10
Type: TF
Location: 11890 - 12891 (+)
Gene ID: HRGMv2_0974_27_11
Type: TC
Location: 13229 - 14989 (-)
Gene ID: HRGMv2_0974_27_12
Type: CAZyme
Location: 15166 - 16608 (-)
Gene ID: HRGMv2_0974_27_13
Type: TF
Location: 16950 - 17987 (+)
Gene ID: HRGMv2_0974_27_14
Type: CAZyme
Location: 18268 - 19707 (-)
Gene ID: HRGMv2_0974_27_15
Type: TC
Location: 19774 - 21549 (-)
Gene ID: HRGMv2_0974_27_16
Type: TF
Location: 21907 - 22911 (+)
Gene ID: HRGMv2_0974_27_17
Type: TC
Location: 23126 - 23464 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0974_27_13 vegetarian > omnivore 1.03352 0.02773

🧭 Explore Read Mapping of CGC

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