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Cluster: HRGMv2_0973_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0973_14 HRGMv2_0973_14_2 476 1693 - GT4
pfam HRGMv2_0973_14 HRGMv2_0973_14_3 1708 2472 - BcrAD_BadFG
pfam HRGMv2_0973_14 HRGMv2_0973_14_4 2627 3790 - HGD-D
TC HRGMv2_0973_14 HRGMv2_0973_14_5 3849 4676 - 3.A.1.5.20
TC HRGMv2_0973_14 HRGMv2_0973_14_6 4669 5646 - 3.A.1.5.20
TC HRGMv2_0973_14 HRGMv2_0973_14_7 5732 7324 - 3.A.1.5.20
pfam HRGMv2_0973_14 HRGMv2_0973_14_8 7460 8743 - HGD-D
TC HRGMv2_0973_14 HRGMv2_0973_14_9 9173 10243 - 3.A.1.1.3
TC HRGMv2_0973_14 HRGMv2_0973_14_10 10247 11689 - 3.A.1.8.1
Gene ID: HRGMv2_0973_14_2
Type: CAZyme
Location: 476 - 1693 (-)
Gene ID: HRGMv2_0973_14_3
Type: pfam
Location: 1708 - 2472 (-)
Gene ID: HRGMv2_0973_14_4
Type: pfam
Location: 2627 - 3790 (-)
Gene ID: HRGMv2_0973_14_5
Type: TC
Location: 3849 - 4676 (-)
Gene ID: HRGMv2_0973_14_6
Type: TC
Location: 4669 - 5646 (-)
Gene ID: HRGMv2_0973_14_7
Type: TC
Location: 5732 - 7324 (-)
Gene ID: HRGMv2_0973_14_8
Type: pfam
Location: 7460 - 8743 (-)
Gene ID: HRGMv2_0973_14_9
Type: TC
Location: 9173 - 10243 (-)
Gene ID: HRGMv2_0973_14_10
Type: TC
Location: 10247 - 11689 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0973_14_2 vegan > omnivore 1.58239 0.00863

🧭 Explore Read Mapping of CGC

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