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Cluster: HRGMv2_0973_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0973_7 HRGMv2_0973_7_6 7336 8736 + GH1
TC HRGMv2_0973_7 HRGMv2_0973_7_7 8857 10209 + 4.A.3.2.2
TC HRGMv2_0973_7 HRGMv2_0973_7_8 10363 10665 + 4.A.3.2.9
TC HRGMv2_0973_7 HRGMv2_0973_7_9 10675 11007 + 4.A.3.2.3
STP HRGMv2_0973_7 HRGMv2_0973_7_10 11249 12202 + Glucokinase
pfam HRGMv2_0973_7 HRGMv2_0973_7_11 12369 13292 + DHH | DHHA2
TC HRGMv2_0973_7 HRGMv2_0973_7_12 13560 14918 + 2.A.33.1.1
Gene ID: HRGMv2_0973_7_6
Type: CAZyme
Location: 7336 - 8736 (+)
Gene ID: HRGMv2_0973_7_7
Type: TC
Location: 8857 - 10209 (+)
Gene ID: HRGMv2_0973_7_8
Type: TC
Location: 10363 - 10665 (+)
Gene ID: HRGMv2_0973_7_9
Type: TC
Location: 10675 - 11007 (+)
Gene ID: HRGMv2_0973_7_10
Type: STP
Location: 11249 - 12202 (+)
Gene ID: HRGMv2_0973_7_11
Type: pfam
Location: 12369 - 13292 (+)
Gene ID: HRGMv2_0973_7_12
Type: TC
Location: 13560 - 14918 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0973_7_8 vegan > omnivore 1.01402 0.00863

🧭 Explore Read Mapping of CGC

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