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Cluster: HRGMv2_0973_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0973_1 HRGMv2_0973_1_4 2681 4057 - GH13_20
TC HRGMv2_0973_1 HRGMv2_0973_1_5 4211 5407 - 2.A.1.2.18
TC HRGMv2_0973_1 HRGMv2_0973_1_6 5532 7892 - 9.A.8.1.6
pfam HRGMv2_0973_1 HRGMv2_0973_1_7 8291 9514 + Zn_Ribbon_1
peptidase HRGMv2_0973_1 HRGMv2_0973_1_8 9787 10689 - S09.UPW
TC HRGMv2_0973_1 HRGMv2_0973_1_9 10933 11496 + 4.A.1.2.6
TC HRGMv2_0973_1 HRGMv2_0973_1_10 11732 13651 + 9.B.97.5.1
Gene ID: HRGMv2_0973_1_4
Type: CAZyme
Location: 2681 - 4057 (-)
Gene ID: HRGMv2_0973_1_5
Type: TC
Location: 4211 - 5407 (-)
Gene ID: HRGMv2_0973_1_6
Type: TC
Location: 5532 - 7892 (-)
Gene ID: HRGMv2_0973_1_7
Type: pfam
Location: 8291 - 9514 (+)
Gene ID: HRGMv2_0973_1_8
Type: peptidase
Location: 9787 - 10689 (-)
Gene ID: HRGMv2_0973_1_9
Type: TC
Location: 10933 - 11496 (+)
Gene ID: HRGMv2_0973_1_10
Type: TC
Location: 11732 - 13651 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0973_1_7 vegetarian > vegan 15.97283 0.00364
HRGMv2_0973_1_10 vegan > omnivore 1.36876 0.00863
HRGMv2_0973_1_10 vegetarian > omnivore 1.42545 0.03701

🧭 Explore Read Mapping of CGC

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