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Cluster: HRGMv2_0972_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0972_27 HRGMv2_0972_27_9 6653 8347 + 4.A.3.1.1
STP HRGMv2_0972_27 HRGMv2_0972_27_10 8510 8890 + DeoRC
pfam HRGMv2_0972_27 HRGMv2_0972_27_11 8887 10119 - Fic
CAZyme HRGMv2_0972_27 HRGMv2_0972_27_12 10486 11907 - GH1
TC HRGMv2_0972_27 HRGMv2_0972_27_13 11983 13740 - 4.A.3.1.1
TF HRGMv2_0972_27 HRGMv2_0972_27_14 14016 15026 + LacI
TC HRGMv2_0972_27 HRGMv2_0972_27_15 15284 17044 - 4.A.3.1.1
CAZyme HRGMv2_0972_27 HRGMv2_0972_27_16 17221 18663 - GH1
TF HRGMv2_0972_27 HRGMv2_0972_27_17 19005 20042 + LacI
CAZyme HRGMv2_0972_27 HRGMv2_0972_27_18 20324 21742 - GH1
Gene ID: HRGMv2_0972_27_9
Type: TC
Location: 6653 - 8347 (+)
Gene ID: HRGMv2_0972_27_10
Type: STP
Location: 8510 - 8890 (+)
Gene ID: HRGMv2_0972_27_11
Type: pfam
Location: 8887 - 10119 (-)
Gene ID: HRGMv2_0972_27_12
Type: CAZyme
Location: 10486 - 11907 (-)
Gene ID: HRGMv2_0972_27_13
Type: TC
Location: 11983 - 13740 (-)
Gene ID: HRGMv2_0972_27_14
Type: TF
Location: 14016 - 15026 (+)
Gene ID: HRGMv2_0972_27_15
Type: TC
Location: 15284 - 17044 (-)
Gene ID: HRGMv2_0972_27_16
Type: CAZyme
Location: 17221 - 18663 (-)
Gene ID: HRGMv2_0972_27_17
Type: TF
Location: 19005 - 20042 (+)
Gene ID: HRGMv2_0972_27_18
Type: CAZyme
Location: 20324 - 21742 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0972_27_17 vegetarian > omnivore 1.05065 0.02242

🧭 Explore Read Mapping of CGC

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