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Cluster: HRGMv2_0971_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0971_8 HRGMv2_0971_8_12 9397 10566 - CE9
STP HRGMv2_0971_8 HRGMv2_0971_8_13 10686 11852 - SIS | SIS
TF HRGMv2_0971_8 HRGMv2_0971_8_14 11967 12698 - GntR
TC HRGMv2_0971_8 HRGMv2_0971_8_15 12883 13965 - 4.A.6.1.4
TC HRGMv2_0971_8 HRGMv2_0971_8_16 13955 14755 - 4.A.6.1.4
TC HRGMv2_0971_8 HRGMv2_0971_8_17 14846 15328 - 4.A.6.1.4
pfam HRGMv2_0971_8 HRGMv2_0971_8_18 15365 15646 - YajC
TC HRGMv2_0971_8 HRGMv2_0971_8_19 15646 16089 - 4.A.6.1.16
Gene ID: HRGMv2_0971_8_12
Type: CAZyme
Location: 9397 - 10566 (-)
Gene ID: HRGMv2_0971_8_13
Type: STP
Location: 10686 - 11852 (-)
Gene ID: HRGMv2_0971_8_14
Type: TF
Location: 11967 - 12698 (-)
Gene ID: HRGMv2_0971_8_15
Type: TC
Location: 12883 - 13965 (-)
Gene ID: HRGMv2_0971_8_16
Type: TC
Location: 13955 - 14755 (-)
Gene ID: HRGMv2_0971_8_17
Type: TC
Location: 14846 - 15328 (-)
Gene ID: HRGMv2_0971_8_18
Type: pfam
Location: 15365 - 15646 (-)
Gene ID: HRGMv2_0971_8_19
Type: TC
Location: 15646 - 16089 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0971_8_18 vegan > omnivore 1.07409 0.00863

🧭 Explore Read Mapping of CGC

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